Anil Wipat

Orcid: 0000-0001-7310-4191

According to our database1, Anil Wipat authored at least 55 papers between 2003 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2023
Synthetic biology open language (SBOL) version 3.1.0.
J. Integr. Bioinform., March, 2023

2022
Integration of probabilistic functional networks without an external Gold Standard.
BMC Bioinform., 2022

Modelling the fitness landscapes of a SCRaMbLEd yeast genome.
Biosyst., 2022

Computational intelligence and machine learning in bioinformatics and computational biology.
Biosyst., 2022

Automatic Diverse Subset Selection From Enzyme Families by Solving the Maximum Diversity Problem.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2022

2021
Computational Strategies for the Identification of a Transcriptional Biomarker Panel to Sense Cellular Growth States in Bacillus subtilis.
Sensors, 2021

Synthetic biology open language visual (SBOL Visual) version 2.3.
J. Integr. Bioinform., 2021

2020
Synthetic biology open language (SBOL) version 3.0.0.
J. Integr. Bioinform., 2020

Synthetic biology open language visual (SBOL visual) version 2.2.
J. Integr. Bioinform., 2020

2019
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1.
J. Integr. Bioinform., 2019

Synthetic Biology Open Language (SBOL) Version 2.3.
J. Integr. Bioinform., 2019

Harmonizing semantic annotations for computational models in biology.
Briefings Bioinform., 2019

2018
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0.
J. Integr. Bioinform., 2018

Synthetic Biology Open Language (SBOL) Version 2.2.0.
J. Integr. Bioinform., 2018

Compiling Combinatorial Genetic Circuits with Semantic Inference.
CoRR, 2018

2016
Synthetic Biology Open Language (SBOL) Version 2.1.0.
J. Integr. Bioinform., 2016

Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization.
Bioinform., 2016

Engineering bacterial populations for pattern formation.
Proceedings of the 2016 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2016

Computational intelligence for metabolic pathway design: Application to the pentose phosphate pathway.
Proceedings of the 2016 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2016

2015
Synthetic Biology Open Language (SBOL) Version 2.0.0.
J. Integr. Bioinform., 2015

2014
Probabilistic Latent Semantic Analysis Applied to Whole Bacterial Genomes Identifies Common Genomic Features.
J. Integr. Bioinform., 2014

BacillusRegNet: A transcriptional regulation database and analysis platform for Bacillus species.
J. Integr. Bioinform., 2014

A distributed computational search strategy for the identification of diagnostics targets: Application to finding aptamer targets for methicillin-resistant staphylococci.
J. Integr. Bioinform., 2014

Introduction to the Special Issue on Computational Synthetic Biology.
ACM J. Emerg. Technol. Comput. Syst., 2014

Composable Modular Models for Synthetic Biology.
ACM J. Emerg. Technol. Comput. Syst., 2014

Tuning receiver characteristics in bacterial quorum communication: An evolutionary approach using standard virtual biological parts.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2014

2013
BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology.
J. Integr. Bioinform., 2013

2012
Microbase2.0: A Generic Framework for Computationally Intensive Bioinformatics Workflows in the Cloud.
J. Integr. Bioinform., 2012

Bayesian integration of networks without gold standards.
Bioinform., 2012

Data mining the human gut microbiota for therapeutic targets.
Briefings Bioinform., 2012

Bridging the Gap between Design and Reality - A Dual Evolutionary Strategy for the Design of Synthetic Genetic Circuits.
Proceedings of the BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1, 2012

2011
Automatic extraction of microorganisms and their habitats from free text using text mining workflows.
J. Integr. Bioinform., 2011

KeyPathwayMiner: Detecting Case-Specific Biological Pathways Using Expression Data.
Internet Math., 2011

Customizable views on semantically integrated networks for systems biology.
Bioinform., 2011

Model annotation for synthetic biology: automating model to nucleotide sequence conversion.
Bioinform., 2011

2010
An integrated dataset for in silico drug discovery.
J. Integr. Bioinform., 2010

Annotation of SBML models through rule-based semantic integration.
J. Biomed. Semant., 2010

Standard virtual biological parts: a repository of modular modeling components for synthetic biology.
Bioinform., 2010

2009
Saint: a lightweight integration environment for model annotation.
Bioinform., 2009

Integration of Full-Coverage Probabilistic Functional Networks with Relevance to Specific Biological Processes.
Proceedings of the Data Integration in the Life Sciences, 6th International Workshop, 2009

Clustering incorporating shortest paths identifies relevant modules in functional interaction networks.
Proceedings of the 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2009

2008
Network motifs in context: An exploration of the evolution of oscillatory dynamics in transcriptional networks.
Proceedings of the 2008 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2008

2007
Exploring Microbial Genome Sequences to Identify Protein Families on the Grid.
IEEE Trans. Inf. Technol. Biomed., 2007

Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models.
J. Integr. Bioinform., 2007

Qualitatively modelling and analysing genetic regulatory networks: a Petri net approach.
Bioinform., 2007

Motifs and Modules in Fractured Functional Yeast Networks.
Proceedings of the 2007 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2007

2006
Taverna: lessons in creating a workflow environment for the life sciences.
Concurr. Comput. Pract. Exp., 2006

Modelling and Analysing Genetic Networks: From Boolean Networks to Petri Nets.
Proceedings of the Computational Methods in Systems Biology, International Conference, 2006

Clustering and Cross-talk in a Yeast Functional Interaction Network.
Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006

2005
Automatic Parameterisation of Stochastic Petri Net Models of Biological Networks.
Proceedings of the Second International Workshop on the Practical Application of Stochastic Modeling, 2005

A grid-based system for microbial genome comparison and analysis.
Proceedings of the 5th International Symposium on Cluster Computing and the Grid (CCGrid 2005), 2005

2004
SARGE: a tool for creation of putative genetic networks.
Bioinform., 2004

Taverna: a tool for the composition and enactment of bioinformatics workflows.
Bioinform., 2004

Delivering web service coordination capability to users.
Proceedings of the 13th international conference on World Wide Web, 2004

2003


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