Carolyn J. Mattingly

According to our database, Carolyn J. Mattingly authored at least 26 papers between 2005 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Comparative Toxicogenomics Database (CTD): update 2023.

Allan Peter Davis, Thomas C. Wiegers, Robin J. Johnson, Daniela Sciaky, Jolene Wiegers, Carolyn J. Mattingly

Nucleic Acids Res., January, 2023

2021

Comparative Toxicogenomics Database (CTD): update 2021.

Allan Peter Davis, Cynthia J. Grondin, Robin J. Johnson, Daniela Sciaky, Jolene Wiegers, Thomas C. Wiegers, Carolyn J. Mattingly

Nucleic Acids Res., 2021

2019

The Comparative Toxicogenomics Database: update 2019.

Allan Peter Davis, Cynthia J. Grondin, Robin J. Johnson, Daniela Sciaky, Roy McMorran, Jolene Wiegers, Thomas C. Wiegers, Carolyn J. Mattingly

Nucleic Acids Res., 2019

2017

The Comparative Toxicogenomics Database: update 2017.

Allan Peter Davis, Cynthia J. Grondin, Robin J. Johnson, Daniela Sciaky, Benjamin L. King, Roy McMorran, Jolene Wiegers, Thomas C. Wiegers, Carolyn J. Mattingly

Nucleic Acids Res., 2017

2016

Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task.

Chih-Hsuan Wei, Yifan Peng, Robert Leaman, Allan Peter Davis, Carolyn J. Mattingly, Jiao Li, Thomas C. Wiegers, Zhiyong Lu

Database J. Biol. Databases Curation, 2016

ToxEvaluator: an integrated computational platform to aid the interpretation of toxicology study-related findings.

Dennis J. Pelletier, Thomas C. Wiegers, Ahmed Enayetallah, C. Kibbey, Mark Gosink, P. Koza-Taylor, Carolyn J. Mattingly, M. Lawton

Database J. Biol. Databases Curation, 2016

BioCreative V CDR task corpus: a resource for chemical disease relation extraction.

Jiao Li, Yueping Sun, Robin J. Johnson, Daniela Sciaky, Chih-Hsuan Wei, Robert Leaman, Allan Peter Davis, Carolyn J. Mattingly, Thomas C. Wiegers, Zhiyong Lu

Database J. Biol. Databases Curation, 2016

2015

The Comparative Toxicogenomics Database's 10th year anniversary: update 2015.

Allan Peter Davis, Cynthia J. Grondin, Kelley Lennon-Hopkins, Cynthia A. Saraceni-Richards, Daniela Sciaky, Benjamin L. King, Thomas C. Wiegers, Carolyn J. Mattingly

Nucleic Acids Res., 2015

2014

Web services-based text-mining demonstrates broad impacts for interoperability and process simplification.

Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly

Database J. Biol. Databases Curation, 2014

BioC interoperability track overview.

Donald C. Comeau, Riza Theresa Batista-Navarro, Hong-Jie Dai, Rezarta Islamaj Dogan, Antonio Jimeno-Yepes, Ritu Khare, Zhiyong Lu, Hernani Marques, Carolyn J. Mattingly, Mariana L. Neves, Yifan Peng, Rafal Rak, Fabio Rinaldi, Richard Tzong-Han Tsai, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur

Database J. Biol. Databases Curation, 2014

2013

The Comparative Toxicogenomics Database: update 2013.

Allan Peter Davis, Cynthia G. Murphy, Robin J. Johnson, Jean M. Lay, Kelley Lennon-Hopkins, Cynthia A. Saraceni-Richards, Daniela Sciaky, Benjamin L. King, Michael C. Rosenstein, Thomas C. Wiegers, Carolyn J. Mattingly

Nucleic Acids Res., 2013

A CTD-Pfizer collaboration: manual curation of 88 000 scientific articles text mined for drug-disease and drug-phenotype interactions.

Allan Peter Davis, Thomas C. Wiegers, Phoebe M. Roberts, Benjamin L. King, Jean M. Lay, Kelley Lennon-Hopkins, Daniela Sciaky, Robin J. Johnson, Heather Keating, Nigel Greene, Robert Hernandez, Kevin J. McConnell, Ahmed Enayetallah, Carolyn J. Mattingly

Database J. Biol. Databases Curation, 2013

2012

BioCreative-2012 Virtual Issue.

Cathy H. Wu, Cecilia N. Arighi, Kevin Bretonnel Cohen, Lynette Hirschman, Martin Krallinger, Zhiyong Lu, Carolyn J. Mattingly, Alfonso Valencia, Thomas C. Wiegers, W. John Wilbur

Database J. Biol. Databases Curation, 2012

Collaborative biocuration - text-mining development task for document prioritization for curation.

Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly

Database J. Biol. Databases Curation, 2012

MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database.

Allan Peter Davis, Thomas C. Wiegers, Michael C. Rosenstein, Carolyn J. Mattingly

Database J. Biol. Databases Curation, 2012

Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Database.

Allan Peter Davis, Robin J. Johnson, Kelley Lennon-Hopkins, Daniela Sciaky, Michael C. Rosenstein, Thomas C. Wiegers, Carolyn J. Mattingly

Database J. Biol. Databases Curation, 2012

Disease model curation improvements at Mouse Genome Informatics.

Susan M. Bello, Joel E. Richardson, Allan Peter Davis, Thomas C. Wiegers, Carolyn J. Mattingly, Mary E. Dolan, Cynthia L. Smith, Judith A. Blake, Janan T. Eppig

Database J. Biol. Databases Curation, 2012

2011

The Comparative Toxicogenomics Database: update 2011.

Allan Peter Davis, Benjamin L. King, Susan Mockus, Cynthia G. Murphy, Cynthia A. Saraceni-Richards, Michael C. Rosenstein, Thomas C. Wiegers, Carolyn J. Mattingly

Nucleic Acids Res., 2011

The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database.

Allan Peter Davis, Thomas C. Wiegers, Cynthia G. Murphy, Carolyn J. Mattingly

Database J. Biol. Databases Curation, 2011

Waiting for a Robust Disease Ontology: A Merger of OMIM and MeSH as a Practical Interim Solution.

Susan M. Bello, Allan Peter Davis, Thomas C. Wiegers, Mary E. Dolan, Cynthia L. Smith, Joel E. Richardson, Judith A. Blake, Carolyn J. Mattingly, Janan T. Eppig

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

2009

Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical-gene-disease networks.

Allan Peter Davis, Cynthia G. Murphy, Cynthia A. Saraceni-Richards, Michael C. Rosenstein, Thomas C. Wiegers, Carolyn J. Mattingly

Nucleic Acids Res., 2009

Genetic and environmental pathways to complex diseases.

Julia M. Gohlke, Reuben Thomas, Yonqing Zhang, Michael C. Rosenstein, Allan Peter Davis, Cynthia G. Murphy, Kevin G. Becker, Carolyn J. Mattingly, Christopher J. Portier

BMC Syst. Biol., 2009

Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD).

Thomas C. Wiegers, Allan Peter Davis, K. Bretonnel Cohen, Lynette Hirschman, Carolyn J. Mattingly

BMC Bioinform., 2009

2008

An Evaluation of Information Content as a Metric for the Inference of Putative Conserved Noncoding Regions in DNA Sequences Using a Genetic Algorithms Approach.

Clare Bates Congdon, Joseph C. Aman, Gerardo M. Nava, H. Rex Gaskins, Carolyn J. Mattingly

IEEE ACM Trans. Comput. Biol. Bioinform., 2008

2007

Towards Interactive Visualization for Exploring Conserved Motifs in Noncoding DNA Sequence.

Clare Bates Congdon, H. Rex Gaskins, Gerardo M. Nava, Carolyn J. Mattingly

Proceedings of the Frontiers in the Convergence of Bioscience and Information Technologies 2007, 2007

2005

Preliminary Results for GAMI: A Genetic Algorithms Approach to Motif Inference.

Clare Bates Congdon, Charles Fizer, Noah W. Smith, H. Rex Gaskins, Joseph C. Aman, Gerardo M. Nava, Carolyn J. Mattingly

Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2005