Hong Cui

According to our database1, Hong Cui authored at least 34 papers between 2002 and 2018.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.



In proceedings 
PhD thesis 


On csauthors.net:


Identifying bacterial biotope entities using sequence labeling: Performance and feature analysis.
JASIST, 2018

Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems.
Database, 2018

Where Are iSchools Heading?
Proceedings of the Transforming Digital Worlds - 13th International Conference, 2018

A Natural Language Processing Pipeline to Extract Phenotypic Data from Formal Taxonomic Descriptions with a Focus on Flagellate Plants.
Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), 2018

Microbial phenomics information extractor (MicroPIE): a natural language processing tool for the automated acquisition of prokaryotic phenotypic characters from text sources.
BMC Bioinformatics, 2016

Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building.
BMC Bioinformatics, 2016

MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions.
J. Biomedical Semantics, 2016

MultiLayerMatrix: Visualizing Large Taxonomic Datasets.
Proceedings of the EuroVis Workshop on Visual Analytics, 2016

OTO: Ontology Term Organizer.
BMC Bioinformatics, 2015

CharaParser+EQ: Performance evaluation without gold standard.
Proceedings of the Information Science with Impact: Research in and for the Community, 2015

Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology.
J. Biomedical Semantics, 2014

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.
Database, 2013

CharaParser for fine-grained semantic annotation of organism morphological descriptions.
JASIST, 2012

Applications of Natural Language Processing in Biodiversity Science.
Adv. Bioinformatics, 2012

Evaluating the botanical coverage of PATO using an unsupervised learning algorithm.
Proceedings of the iConference 2012, Toronto, Ontario, Canada, February 7-10, 2012, 2012

Mapping of glossary terms from the Flora of North America to the Plant Ontology enhances both resources.
Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

OTO: Ontology term organizer.
Proceedings of the Information, Interaction, Innovation: Celebrating the Past, Constructing the Present and Creating the Future, 2012

Combine unsupervised learning and heuristic rules to annotate organism morphological descriptions.
Proceedings of the Bridging the Gulf: Communication and Information in Society, Technology, and Work, 2011

Semantic annotation of biosystematics literature without training examples.
JASIST, 2010

Competency evaluation of plant character ontologies against domain literature.
JASIST, 2010

Semantic annotation of morphological descriptions: an overall strategy.
BMC Bioinformatics, 2010

Tools for Semantic Annotation of Taxonomic Descriptions.
Proceedings of the Knowledge-Based and Intelligent Information and Engineering Systems, 2010

From text to RDF triple store: An application for biodiversity literature.
Proceedings of the Navigating Streams in an Information Ecosystem, 2010

Unsupervised extraction of text segments from heterogeneous document collections.
Proceedings of the Navigating Streams in an Information Ecosystem, 2010

Intelligent feature extraction and knowledge mining by multivariate analyses.
Proceedings of the IEEE Symposium on Computational Intelligence and Data Mining, 2009

Application of semantic annotation for quality insurance in biosystematics publishing.
Proceedings of the Thriving on Diversity: Information Opportunities in a Pluralistic World, 2009

An application for semantic markup of biodiversity documents.
Proceedings of the ACM/IEEE Joint Conference on Digital Libraries, 2008

Unsupervised semantic markup of literature for biodiversity digital libraries.
Proceedings of the ACM/IEEE Joint Conference on Digital Libraries, 2008

The reusability of induced knowledge for the automatic semantic markup of taxonomic descriptions.
JASIST, 2007

Unsupervised structure discovery for biodiversity information.
Proceedings of the ACM/IEEE Joint Conference on Digital Libraries, 2006

Automated concept discovery in corpora of morphological descriptions.
Proceedings of the Information Realities: Shaping the Digital Future for All, 2006

How Do Search Engines Handle Chinese Queries?
Webology, 2005

MARTT: Using induced knowledge base to automatically mark up plant taxonomic descriptions with XML.
Proceedings of the Sparking Synergies: Bringing Research and Practice Together, 2005

An approach to automatic classification of text for information retrieval.
Proceedings of the ACM/IEEE Joint Conference on Digital Libraries, 2002