Peichen Pan

Orcid: 0000-0003-1152-7759

According to our database1, Peichen Pan authored at least 43 papers between 1992 and 2024.

Collaborative distances:



In proceedings 
PhD thesis 




A general model for predicting enzyme functions based on enzymatic reactions.
J. Cheminformatics, December, 2024

Genetic Algorithm-Based Receptor Ligand: A Genetic Algorithm-Guided Generative Model to Boost the Novelty and Drug-Likeness of Molecules in a Sampling Chemical Space.
J. Chem. Inf. Model., February, 2024

Dissecting the role of ALK double mutations in drug resistance to lorlatinib with in-depth theoretical modeling and analysis.
Comput. Biol. Medicine, February, 2024

Deep Lead Optimization: Leveraging Generative AI for Structural Modification.
CoRR, 2024

Deep Geometry Handling and Fragment-wise Molecular 3D Graph Generation.
CoRR, 2024

Structure-based virtual screening of novel USP5 inhibitors targeting the zinc finger ubiquitin-binding domain.
Comput. Biol. Medicine, 2024

TB-IECS: an accurate machine learning-based scoring function for virtual screening.
J. Cheminformatics, December, 2023

Small-Molecule Conformer Generators: Evaluation of Traditional Methods and AI Models on High-Quality Data Sets.
J. Chem. Inf. Model., November, 2023

ML-PLIC: a web platform for characterizing protein-ligand interactions and developing machine learning-based scoring functions.
Briefings Bioinform., September, 2023

Efficient and accurate large library ligand docking with KarmaDock.
Nat. Comput. Sci., 2023

Learning on topological surface and geometric structure for 3D molecular generation.
Nat. Comput. Sci., 2023

FPGA HLS Today: Successes, Challenges, and Opportunities.
ACM Trans. Reconfigurable Technol. Syst., 2022

VGSC-DB: an online database of voltage-gated sodium channels.
J. Cheminformatics, 2022

ReMODE: a deep learning-based web server for target-specific drug design.
J. Cheminformatics, 2022

Caffeine: Toward Uniformed Representation and Acceleration for Deep Convolutional Neural Networks.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2019

Comparative analyses of structural features and scaffold diversity for purchasable compound libraries.
J. Cheminformatics, 2017

Sequential Circuit Technology Mapping.
Encyclopedia of Algorithms, 2016

Software Infrastructure for Enabling FPGA-Based Accelerations in Data Centers: Invited Paper.
Proceedings of the 2016 International Symposium on Low Power Electronics and Design, 2016

Caffeine: towards uniformed representation and acceleration for deep convolutional neural networks.
Proceedings of the 35th International Conference on Computer-Aided Design, 2016

Source-to-Source Optimization for HLS.
Proceedings of the FPGAs for Software Programmers, 2016

Identification and Preliminary SAR Analysis of Novel Type-I Inhibitors of TIE-2 via Structure-Based Virtual Screening and Biological Evaluation in in vitro Models.
J. Chem. Inf. Model., 2015

Assessing an Ensemble Docking-Based Virtual Screening Strategy for Kinase Targets by Considering Protein Flexibility.
J. Chem. Inf. Model., 2014

Development and Evaluation of an Integrated Virtual Screening Strategy by Combining Molecular Docking and Pharmacophore Searching Based on Multiple Protein Structures.
J. Chem. Inf. Model., 2013

Molecular Principle of Topotecan Resistance by Topoisomerase I Mutations through Molecular Modeling Approaches.
J. Chem. Inf. Model., 2013

Sequential Circuit Technology Mapping.
Proceedings of the Encyclopedia of Algorithms - 2008 Edition, 2008

FPGA Design Automation: A Survey.
Found. Trends Electron. Des. Autom., 2006

Monotone bipartitioning problem in a planar point set with applications to VLSI.
ACM Trans. Design Autom. Electr. Syst., 2002

Partial Scan with Preselected Scan Signals.
IEEE Trans. Computers, 1999

The Retiming of Single-Phase Clocked Circuits Containing Level-Sensitive Latches.
Proceedings of the 12th International Conference on VLSI Design (VLSI Design 1999), 1999

Optimal Retiming for Initial State Computation.
Proceedings of the 12th International Conference on VLSI Design (VLSI Design 1999), 1999

Performance-Driven Integration of Retiming and Resynthesis.
Proceedings of the 36th Conference on Design Automation, 1999

Optimal clock period FPGA technology mapping for sequential circuits.
ACM Trans. Design Autom. Electr. Syst., 1998

Optimal clock period clustering for sequential circuits with retiming.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 1998

Low power logic synthesis under a general delay model.
Proceedings of the 1998 International Symposium on Low Power Electronics and Design, 1998

A New Retiming-Based Technology Mapping Algorithm for LUT-based FPGAs.
Proceedings of the 1998 ACM/SIGDA Sixth International Symposium on Field Programmable Gate Arrays, 1998

Optimal Graph Constraint Reduction for Symbolic Layout Compaction.
Algorithmica, 1997

Continuous Retiming: Algorithms and Applications.
Proceedings of the Proceedings 1997 International Conference on Computer Design: VLSI in Computers & Processors, 1997

Area Minimization for Hierarchical Floorplans.
Algorithmica, 1996

Technology Mapping of Sequential Circuits for LUT-Based FPGAs for Performance.
Proceedings of the 1996 Fourth International Symposium on Field Programmable Gate Arrays, 1996

Desensitization for Power Reduction in Sequential Circuits.
Proceedings of the 33st Conference on Design Automation, 1996

Area minimization for floorplans.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 1995

Partial Scan with Pre-selected Scan Signals.
Proceedings of the 32st Conference on Design Automation, 1995

Area minimization for general floorplans.
Proceedings of the 1992 IEEE/ACM International Conference on Computer-Aided Design, 1992