Abel González-Pérez

According to our database, Abel González-Pérez authored at least 14 papers between 2004 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

OpenVariant: a toolkit to parse and operate multiple input file formats.

David Martínez-Millán, Federica Brando, Miguel L. Grau, Mònica Sánchez-Guixé, Carlos López-Elorduy, Iker Reyes-Salazar, Jordi Deu-Pons, Núria López-Bigas, Abel González-Pérez

Bioinform., 2024

2022

Ten simple rules for a successful international consortium in big data omics.

Miranda D. Stobbe, Abel González-Pérez, Núria López-Bigas, Ivo Glynne Gut

PLoS Comput. Biol., October, 2022

DeepMP: a deep learning tool to detect DNA base modifications on Nanopore sequencing data.

José Bonet, Mandi Chen, Marc Dabad, Simon Heath, Abel González-Pérez, Núria López-Bigas, Jens Lagergren

Bioinform., 2022

2020

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.

Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj, Julian M. Hess, Randi Istrup Juul, Ziao Lin, Lars Feuerbach, Radhakrishnan Sabarinathan, Tobias Madsen, Jaegil Kim, Loris Mularoni, Shimin Shuai, Andrés Lanzós, Carl Herrmann, Yosef E. Maruvka, Ciyue Shen, Samirkumar B. Amin, Pratiti Bandopadhayay, Johanna Bertl, Keith A. Boroevich, John Busanovich, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, David Craft, Priyanka Dhingra, Klev Diamanti, Nuno A. Fonseca, Abel González-Pérez, Qianyun Guo, Mark P. Hamilton, Nicholas J. Haradhvala, Chen Hong, Keren Isaev, Todd A. Johnson, Malene Juul, André Kahles, Abdullah Kahraman, Youngwook Kim, Jan Komorowski, Kiran Kumar, Sushant Kumar, Donghoon Lee, Kjong-Van Lehmann, Yilong Li, Eric Minwei Liu, Lucas Lochovsky, Keunchil Park, Oriol Pich, Nicola D. Roberts, Gordon Saksena, Steven E. Schumacher, Nikos Sidiropoulos, Lina Sieverling, Nasa Sinnott-Armstrong, Chip Stewart, David Tamborero, Jose M. C. Tubio, Husen M. Umer, Liis Uusküla-Reimand, Claes Wadelius, Lina Wadi, Xiaotong Yao, Cheng-Zhong Zhang, Jing Zhang, James E. Haber, Asger Hobolth, Marcin Imielinski, Manolis Kellis, Michael S. Lawrence, Christian von Mering, Hidewaki Nakagawa, Benjamin J. Raphael, Mark A. Rubin, Chris Sander, Lincoln D. Stein, Joshua M. Stuart, Tatsuhiko Tsunoda, David A. Wheeler, Rory Johnson, Jüri Reimand, Mark Gerstein, Ekta Khurana, Peter J. Campbell, Núria López-Bigas, Gary D. Bader, Jonathan Barenboim, Rameen Beroukhim, Søren Brunak, Ken Chen, Jung Kyoon Choi, Jordi Deu-Pons, J. Lynn Fink, Joan Frigola, Carlo Gambacorti Passerini, Dale W. Garsed, Gad Getz, Ivo Glynne Gut, David Haan, Arif Ozgun Harmanci, Mohamed Helmy, Ermin Hodzic, José M. G. Izarzugaza, Jong K. Kim, Jan O. Korbel, Erik Larsson, Shantao Li, Xiaotong Li, Shaoke Lou, Kathleen Marchal, Iñigo Martincorena, Alexander Martínez-Fundichely, Patrick D. McGillivray, William Meyerson, Ferran Muiños, Marta Paczkowska, Kiejung Park, Jakob Skou Pedersen, Tirso Pons, Sergio Pulido-Tamayo, Iker Reyes-Salazar, Matthew A. Reyna, Carlota Rubio-Perez, Süleyman Cenk Sahinalp, Leonidas Salichos, Mark Shackleton, Raunak Shrestha, Alfonso Valencia, Miguel Vazquez, Lieven P. C. Verbeke, Jiayin Wang, Jonathan Warrell, Sebastian M. Waszak, Joachim Weischenfeldt, Guanming Wu, Jun Yu, Xuanping Zhang, Yan Zhang, Zhongming Zhao, Lihua Zou, Kadir C. Akdemir, Eva G. Alvarez, Adrian Baez-Ortega, Paul C. Boutros, David D. L. Bowtell, Benedikt Brors, Kathleen H. Burns, Kin Chan, Isidro Cortés-Ciriano, Ana Dueso-Barroso, Andrew J. Dunford, Paul A. Edwards, Xavier Estivill, Dariush Etemadmoghadam, Milana Frenkel-Morgenstern, Dmitry A. Gordenin, Barbara Hutter, David T. W. Jones, Young Seok Ju, Marat D. Kazanov, Leszek J. Klimczak, Youngil Koh, Eunjung Alice Lee, Jake June-Koo Lee, Andy G. Lynch, Geoff MacIntyre, Florian Markowetz, Matthew Meyerson, Satoru Miyano, Fabio C. P. Navarro, Stephan Ossowski, Peter J. Park, John V. Pearson, Montserrat Puiggròs, Karsten Rippe, Steven A. Roberts, Bernardo Rodriguez-Martin, Ralph Scully, David Torrents, Izar Villasante, Nicola Waddell, Jeremiah A. Wala, Lixing Yang, Sung-Soo Yoon, Jorge Zamora

Nat., 2020

BnpC: Bayesian non-parametric clustering of single-cell mutation profiles.

Nico Borgsmüller, José Bonet, Francesco Marass, Abel González-Pérez, Núria López-Bigas, Niko Beerenwinkel

Bioinform., 2020

Bayesian Non-parametric Clustering of Single-Cell Mutation Profiles.

Nico Borgsmüller, José Bonet, Francesco Marass, Abel González-Pérez, Núria López-Bigas, Niko Beerenwinkel

Proceedings of the Research in Computational Molecular Biology, 2020

2019

OncodriveCLUSTL: a sequence-based clustering method to identify cancer drivers.

Claudia Arnedo-Pac, Loris Mularoni, Ferran Muiños, Abel González-Pérez, Núria López-Bigas

Bioinform., 2019

2014

OncodriveROLE classifies cancer driver genes in loss of function and activating mode of action.

Michael P. Schroeder, Carlota Rubio-Perez, David Tamborero, Abel González-Pérez, Núria López-Bigas

Bioinform., 2014

2013

OncodriveCLUST: exploiting the positional clustering of somatic mutations to identify cancer genes.

David Tamborero, Abel González-Pérez, Núria López-Bigas

Bioinform., 2013

2012

PARADIGM-SHIFT predicts the function of mutations in multiple cancers using pathway impact analysis.

Sam Ng, Eric A. Collisson, Artem Sokolov, Theodore Goldstein, Abel González-Pérez, Núria López-Bigas, Christopher Benz, David Haussler, Joshua M. Stuart

Bioinform., 2012

2009

Conservation of key members in the course of the evolution of the insulin signaling pathway.

Janet Piñero González, Olimpia Carrillo Farnés, Ana Tereza Ribeiro de Vasconcelos, Abel González Pérez

Biosyst., 2009

2008

Prediction of TF target sites based on atomistic models of protein-DNA complexes.

Vladimir Espinosa Angarica, Abel González Pérez, Ana Tereza Ribeiro de Vasconcelos, Julio Collado-Vides, Bruno Contreras-Moreira

BMC Bioinform., 2008

2007

Tractor_DB (version 2.0): a database of regulatory interactions in gamma-proteobacterial genomes.

Abel González Pérez, Vladimir Espinosa Angarica, Ana Tereza Ribeiro de Vasconcelos, Julio Collado-Vides

Nucleic Acids Res., 2007

2004

Complementing computationally predicted regulatory sites in Tractor_DB using a pattern matching approach.

Marylens Hernández Guía, Abel González Pérez, Vladimir Espinosa Angarica, Ana Tereza Ribeiro de Vasconcelos, Julio Collado-Vides

Silico Biol., 2004