Jie Zheng

According to our database1, Jie Zheng authored at least 35 papers between 2010 and 2019.

Collaborative distances:

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Other 

Links

On csauthors.net:

Bibliography

2019
VIO: ontology classification and study of vaccine responses given various experimental and analytical conditions.
BMC Bioinform., 2019

OSCI: standardized stem cell ontology representation and use cases for stem cell investigation.
BMC Bioinform., 2019

OHMI: the ontology of host-microbiome interactions.
J. Biomed. Semant., 2019

2018
MicrobiomeDB: a systems biology platform for integrating, mining and analyzing microbiome experiments.
Nucleic Acids Res., 2018

The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability.
J. Biomed. Semant., 2018

eXtensible Ontology Development (XOD) using Web-based Ontoanimal Tools.
Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), 2018

Standardization of the Histopathology Cancer Report: An Ontological Approach.
Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), 2018

2017
The Ontology of Biological and Clinical Statistics (OBCS)-based statistical method standardization and meta-analysis of host responses to yellow fever vaccines.
Quant. Biol., 2017

Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration.
Nucleic Acids Res., 2017

EuPathDB: the eukaryotic pathogen genomics database resource.
Nucleic Acids Res., 2017

2016
The Ontology of Biological and Clinical Statistics (OBCS) for standardized and reproducible statistical analysis.
J. Biomed. Semant., 2016

VICO: Ontology-based representation and integrative analysis of Vaccination Informed Consent forms.
J. Biomed. Semant., 2016

OBIB-a novel ontology for biobanking.
J. Biomed. Semant., 2016

Malaria Study Data Integration and Information Retrieval Based on OBO Foundry Ontologies.
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

Ontobull and BFOConvert: Web-based Programs to Support Automatic Ontology Conversion.
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

EGO: A Biomedical Ontology for Integrative Epigenome Representation and Analysis.
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

2015
Ontorat: automatic generation of new ontology terms, annotations, and axioms based on ontology design patterns.
J. Biomed. Semant., 2015

Modeling a microbial community and biodiversity assay with OBO Foundry ontologies: the interoperability gains of a modular approach.
Database J. Biol. Databases Curation, 2015

Ontorat: Automatic generation and editing of ontology terms.
Proceedings of the International Conference on Biomedical Ontology, 2015

Ontoanimal tools for reusing ontologies, generating and editing ontology terms, and dereferencing ontology terms.
Proceedings of the International Conference on Biomedical Ontology, 2015

2014
CLO: The cell line ontology.
J. Biomed. Semant., 2014

Ontodog: a web-based ontology community view generation tool.
Bioinform., 2014

OBCS: The Ontology of Biological and Clinical Statistics.
Proceedings of the 5th International Conference on Biomedical Ontology, 2014

Modeling a Microbial Community and Biodiversity Assay with OBI and PCO OBO Foundry Ontologies: the Interoperability Gains of a Modular Approach.
Proceedings of the 5th International Conference on Biomedical Ontology, 2014

2013
Development of an Application Ontology for Beta Cell Genomics Based On the Ontology for Biomedical Investigations.
Proceedings of the 4th International Conference on Biomedical Ontology, 2013

Diagnostic criteria and clinical guidelines standardization to automate case classification.
Proceedings of the 4th International Conference on Biomedical Ontology, 2013

Alignment of Cultured Cell Modeling Across OBO Foundry Ontologies: Key Outcomes, Insights.
Proceedings of the 4th International Conference on Biomedical Ontology, 2013

2012
The Ontology for Parasite Lifecycle (OPL): towards a consistent vocabulary of lifecycle stages in parasitic organisms.
J. Biomed. Semant., 2012

Ontodog: A Web-based Ontology Community View Generator.
Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

Suggestions for Galaxy Workflow Design Using Semantically Annotated Services.
Proceedings of the Formal Ontology in Information Systems, 2012

2011
AnnotCompute: annotation-based exploration and meta-analysis of genomics experiments.
Database J. Biol. Databases Curation, 2011

Ontology Driven Data Collection for EuPathDB.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Enriching the Ontology for Biomedical Investigations (OBI) to Improve its Suitability for Web Service Annotations.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

2010
Modeling biomedical experimental processes with OBI.
J. Biomed. Semant., 2010

Modeling sample variables with an Experimental Factor Ontology.
Bioinform., 2010


  Loading...