Jie Zheng
Orcid: 0000-0002-2999-0103Affiliations:
- University of Pennsylvania, Perelman School of Medicine, Department of Genetics, Philadelphia, PA, USA
According to our database1,
Jie Zheng
authored at least 47 papers
between 2010 and 2023.
Collaborative distances:
Collaborative distances:
Timeline
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Online presence:
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on orcid.org
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on github.com
On csauthors.net:
Bibliography
2023
The Occupation Ontology (OccO): Building a Bridge between Global Occupational Standards.
Proceedings of the Joint Ontology Workshops 2023 Episode IX: The Quebec Summer of Ontology co-located with the 13th International Conference on Formal Ontology in Information Systems (FOIS 2023), 2023
Ontology-based Representation and Analysis of Conditional Vaccine Immune Responses Using Omics Data.
Proceedings of the International Conference on Biomedical Ontologies 2023 together with the Workshop on Ontologies for Infectious and Immune-Mediated Disease Data Science (OIIDDS 2023) and the FAIR Ontology Harmonization and TRUST Data Interoperability Workshop (FOHTI 2023), Brasília, Brazil, August 28, 2023
2022
Nucleic Acids Res., 2022
A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology.
J. Biomed. Semant., 2022
2021
CIDO ontology updates and secondary analysis of host responses to COVID-19 infection based on ImmPort reports and literature.
J. Biomed. Semant., 2021
Standardization of assay representation in the Ontology for Biomedical Investigations.
Database J. Biol. Databases Curation, 2021
Database J. Biol. Databases Curation, 2021
2020
piNET: a versatile web platform for downstream analysis and visualization of proteomics data.
Nucleic Acids Res., 2020
2019
VIO: ontology classification and study of vaccine responses given various experimental and analytical conditions.
BMC Bioinform., 2019
OSCI: standardized stem cell ontology representation and use cases for stem cell investigation.
BMC Bioinform., 2019
Alignment of the Ontology of Host-Microbiome Interactions (OHMI) High Level Terms with Existing OBO Ontologies.
Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019), Buffalo, New York, USA, July 30, 2019
OPMI: the Ontology of Precision Medicine and Investigation and its Support for Clinical Data and Metadata Representation and Analysis.
Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019), Buffalo, New York, USA, July 30, 2019
Mapping Data Annotated with the Minimum Information About BIobank data Sharing (MIABIS) 2.0 to the Ontology for Biobanking (OBIB).
Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019), Buffalo, New York, USA, July 30, 2019
Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019), Buffalo, New York, USA, July 30, 2019
2018
MicrobiomeDB: a systems biology platform for integrating, mining and analyzing microbiome experiments.
Nucleic Acids Res., 2018
The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability.
J. Biomed. Semant., 2018
Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), 2018
Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), 2018
2017
The Ontology of Biological and Clinical Statistics (OBCS)-based statistical method standardization and meta-analysis of host responses to yellow fever vaccines.
Quant. Biol., 2017
Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration.
Nucleic Acids Res., 2017
Nucleic Acids Res., 2017
2016
The Ontology of Biological and Clinical Statistics (OBCS) for standardized and reproducible statistical analysis.
J. Biomed. Semant., 2016
VICO: Ontology-based representation and integrative analysis of Vaccination Informed Consent forms.
J. Biomed. Semant., 2016
Malaria Study Data Integration and Information Retrieval Based on OBO Foundry Ontologies.
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016
Ontobull and BFOConvert: Web-based Programs to Support Automatic Ontology Conversion.
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016
2015
Ontorat: automatic generation of new ontology terms, annotations, and axioms based on ontology design patterns.
J. Biomed. Semant., 2015
Modeling a microbial community and biodiversity assay with OBO Foundry ontologies: the interoperability gains of a modular approach.
Database J. Biol. Databases Curation, 2015
Proceedings of the International Conference on Biomedical Ontology, 2015
Ontoanimal tools for reusing ontologies, generating and editing ontology terms, and dereferencing ontology terms.
Proceedings of the International Conference on Biomedical Ontology, 2015
2014
Proceedings of the 5th International Conference on Biomedical Ontology, 2014
Modeling a Microbial Community and Biodiversity Assay with OBI and PCO OBO Foundry Ontologies: the Interoperability Gains of a Modular Approach.
Proceedings of the 5th International Conference on Biomedical Ontology, 2014
2013
Development of an Application Ontology for Beta Cell Genomics Based On the Ontology for Biomedical Investigations.
Proceedings of the 4th International Conference on Biomedical Ontology, 2013
Diagnostic criteria and clinical guidelines standardization to automate case classification.
Proceedings of the 4th International Conference on Biomedical Ontology, 2013
Alignment of Cultured Cell Modeling Across OBO Foundry Ontologies: Key Outcomes, Insights.
Proceedings of the 4th International Conference on Biomedical Ontology, 2013
2012
The Ontology for Parasite Lifecycle (OPL): towards a consistent vocabulary of lifecycle stages in parasitic organisms.
J. Biomed. Semant., 2012
Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012
Proceedings of the Formal Ontology in Information Systems, 2012
2011
AnnotCompute: annotation-based exploration and meta-analysis of genomics experiments.
Database J. Biol. Databases Curation, 2011
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011
Enriching the Ontology for Biomedical Investigations (OBI) to Improve its Suitability for Web Service Annotations.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011
2010